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    PTPRT protein tyrosine phosphatase receptor type T [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

    Gene ID: 102447678, updated on 10-Mar-2024

    Summary

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    Gene symbol
    PTPRT
    Gene description
    protein tyrosine phosphatase receptor type T
    See related
    Ensembl:ENSPSIG00000016148
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pelodiscus sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
    Orthologs
    human mouse all
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    Genomic context

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    See PTPRT in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005856064.1 (21100..356972)

    NW_005856064.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112546361 Neighboring gene uncharacterized LOC112546362 Neighboring gene uncharacterized LOC112546363

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005856064 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-type tyrosine-protein phosphatase T

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PelSin_1.0 Primary Assembly

    Genomic

    1. NW_005856064.1 Reference PelSin_1.0 Primary Assembly

      Range
      21100..356972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025186407.1 → XP_025042192.1  receptor-type tyrosine-protein phosphatase T

      UniProtKB/TrEMBL
      K7GD01
      Related
      ENSPSIP00000018162.1, ENSPSIT00000018247.1
      Conserved Domains (2) summary
      cd00047
      Location:501 → 728
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
      pfam00041
      Location:52 → 83
      fn3; Fibronectin type III domain
    Nucleotide Protein
    Heading Accession and Version

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