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    LOC112560835 WD repeat-containing protein 19-like [ Pomacea canaliculata ]

    Gene ID: 112560835, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC112560835
    Gene description
    WD repeat-containing protein 19-like
    Locus tag
    C0Q70_05402
    See related
    EnsemblRapid:LOC112560835
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pomacea canaliculata
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Caenogastropoda; Architaenioglossa; Ampullarioidea; Ampullariidae; Pomacea
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC112560835 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    29
    Annotation release Status Assembly LG Location
    100 current ASM307304v1 (GCF_003073045.1) LG3 NC_037592.1 (19666461..19757897)

    Linkage Group LG3 - NC_037592.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112560919 Neighboring gene uncharacterized LOC112560923 Neighboring gene uncharacterized LOC112559550 Neighboring gene autophagy-related protein 13-like Neighboring gene post-GPI attachment to proteins factor 2-like Neighboring gene protocadherin-9-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037592.1 Chromosome LG3 Reference ASM307304v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intraciliary retrograde transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle A IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat-containing protein 19-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pomacea canaliculata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM307304v1 Primary Assembly

    Genomic

    1. NC_037592.1 Reference ASM307304v1 Primary Assembly

      Range
      19666461..19757897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025232905.1 → XP_025088690.1  WD repeat-containing protein 19-like isoform X1

      UniProtKB/TrEMBL
      A0A2T7PL41
      Related
      XP_025088690.1, XM_025232905.1
      Conserved Domains (4) summary
      COG2319
      Location:26 → 345
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:57 → 96
      7WD40; WD40 repeat [structural motif]
      pfam15911
      Location:508 → 564
      WD40_3; WD domain, G-beta repeat
      cl26002
      Location:645 → 1046
      TPR_11; TPR repeat

    2. XM_025232906.1 → XP_025088691.1  WD repeat-containing protein 19-like isoform X2

      UniProtKB/TrEMBL
      A0A2T7PL41
      Related
      XP_025088691.1, XM_025232906.1
      Conserved Domains (4) summary
      COG2319
      Location:26 → 345
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:57 → 96
      7WD40; WD40 repeat [structural motif]
      pfam15911
      Location:508 → 564
      WD40_3; WD domain, G-beta repeat
      cl26002
      Location:645 → 1046
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version

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