U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    ybaK Cys-tRNA(Pro) deacylase [ Bacteroides fragilis NCTC 9343 ]

    Gene ID: 60365945, updated on 11-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ybaK
    Gene description
    Cys-tRNA(Pro) deacylase
    Locus tag
    BF9343_RS12580
    Gene type
    protein coding
    Organism
    Bacteroides fragilis NCTC 9343 (strain: NCTC 9343, culture-collection: ATCC:25285, culture-collection: NCTC:9343, type-material: type strain of Bacteroides fragilis)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
    Old locus tag
    BF9343_2552
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_003228.3 (3063781..3064260, complement)

    NC_003228.3Genomic Context describing neighboring genes Neighboring gene GNAT family N-acetyltransferase Neighboring gene peptide MFS transporter Neighboring gene excinuclease ABC subunit UvrA Neighboring gene LysM peptidoglycan-binding domain-containing protein Neighboring gene porin family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003228.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Aminoacyl-tRNA substrate and enzyme backbone atoms contribute to translational quality control by YbaK. Kumar S, et al. J Phys Chem B, 2013 Apr 25. PMID 23185990, Free PMC Article
    2. An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing. Wong FC, et al. J Biol Chem, 2003 Dec 26. PMID 14530268
    3. Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex. An S, et al. J Biol Chem, 2005 Oct 14. PMID 16087664
    4. Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications. Zhang H, et al. Proteins, 2000 Jul 1. PMID 10813833
    5. Extensive DNA inversions in the B. fragilis genome control variable gene expression. Cerdeño-Tárraga AM, et al. Science, 2005 Mar 4. PMID 15746427

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    Cys-tRNA(Pro) deacylase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003228.3 Reference assembly

      Range
      3063781..3064260 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005788187.1 MULTISPECIES: Cys-tRNA(Pro) deacylase [Bacteroides]

      See identical proteins and their annotated locations for WP_005788187.1

      UniProtKB/TrEMBL
      A0A015VW53, A0A015W0Q3, A0A015X258, A0A015ZIF4, A0A016BVP3, A0A0E2APK1, A0A149N5F8, A0AAN4SI27, A0AAV3MTH8, A0AAV3N8C4, D1JPB6, E1WPQ7, F7LRH4, I9JU96, Q5LC33, Q64T18
    Nucleotide Protein
    Heading Accession and Version