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    ZRANB1 zinc finger RANBP2-type containing 1 [ Dromaius novaehollandiae (emu) ]

    Gene ID: 112992695, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ZRANB1
    Gene description
    zinc finger RANBP2-type containing 1
    See related
    Ensembl:ENSDNVG00000003507
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dromaius novaehollandiae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
    Orthologs
    human mouse all
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    Genomic context

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    See ZRANB1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 6 NC_088103.1 (45668871..45717113)
    100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020453615.1 (912784..962010)

    Chromosome 6 - NC_088103.1Genomic Context describing neighboring genes Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene uncharacterized LOC135328762 Neighboring gene C-terminal binding protein 2 Neighboring gene testis expressed 36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin thioesterase ZRANB1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bDroNov1.hap1

    Genomic

    1. NC_088103.1 Reference bDroNov1.hap1

      Range
      45668871..45717113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064514362.1 → XP_064370432.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A7K9ATK7, A0A8C4J6A3

    2. XM_026115908.2 → XP_025971693.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A7K9ATK7, A0A8C4J6A3
      Related
      ENSDNVP00000004912.1
      Conserved Domains (3) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease

    3. XM_026115912.2 → XP_025971697.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A7K9ATK7, A0A8C4J6A3
      Conserved Domains (3) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease

    4. XM_026115910.2 → XP_025971695.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A7K9ATK7, A0A8C4J6A3
      Related
      ENSDNVP00000004924.1
      Conserved Domains (3) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease

    5. XM_064514363.1 → XP_064370433.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A7K9ATK7, A0A8C4J6A3
    Nucleotide Protein
    Heading Accession and Version

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