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    YALI1_D14276g uncharacterized protein [ Yarrowia lipolytica ]

    Gene ID: 2910351, updated on 18-Sep-2024

    Summary

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    Gene symbol
    YALI1_D14276g
    Gene description
    uncharacterized protein
    Locus tag
    YALI1_D14276g
    See related
    FungiDB:YALI1_D14276g; VEuPathDB:YALI1_D14276g
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Yarrowia lipolytica (strain: CLIB89(W29), culture-collection: ATCC:20460)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Dipodascomycetes; Dipodascales; Dipodascales incertae sedis; Yarrowia
    Old locus tag
    YALI2_D00228g
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    Genomic context

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    See YALI1_D14276g in Genome Data Viewer
    Location:
    chromosome: 1D
    Exon count:
    1
    Sequence:
    Chromosome: 1D; NC_090773.1 (1427656..1428264)

    Chromosome 1D - NC_090773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_090773.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity. Magnan C, et al. PLoS One, 2016. PMID 27603307, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    XP_502697.1
    • Compare to YALI0D11396g, similar to Saccharomyces cerevisiae RPC25 (YKL144C); ancestral locus Anc_5.250, similar to uniprot|P35718 Saccharomyces cerevisiae YKL144c RPC25 DNA-direcred RNA polymerase III 25 KD subunit singleton

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_090773.1 Reference assembly

      Range
      1427656..1428264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_502697.3 → XP_502697.1  uncharacterized protein YALI1_D14276g [Yarrowia lipolytica]

      See identical proteins and their annotated locations for XP_502697.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1D8NE54, Q6C9G5
      Conserved Domains (2) summary
      TIGR00448
      Location:1 → 159
      rpoE; DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
      pfam08292
      Location:83 → 201
      RNA_pol_Rbc25; RNA polymerase III subunit Rpc25
    Nucleotide Protein
    Heading Accession and Version

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