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    ddpB D,D-dipeptide ABC transporter permease [ Escherichia coli O157:H7 str. Sakai ]

    Gene ID: 917289, updated on 10-Oct-2024

    Summary

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    Gene symbol
    ddpB
    Gene description
    D,D-dipeptide ABC transporter permease
    Locus tag
    ECs_2090
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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    Genomic context

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    Sequence:
    NC_002695.2 (2081287..2082267, complement)

    NC_002695.2Genomic Context describing neighboring genes Neighboring gene peroxiredoxin osmC Neighboring gene D,D-dipeptide ABC transporter ATPase Neighboring gene D,D-dipeptide ABC transporter ATPase Neighboring gene D,D-dipeptide ABC transporter permease Neighboring gene D,D-dipeptide ABC transporter periplasmic binding protein Neighboring gene D-ala-D-ala dipeptidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002695.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
    2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
    3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
    4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    D,D-dipeptide ABC transporter permease

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002695.2 Reference assembly

      Range
      2081287..2082267 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_310117.2 D,D-dipeptide ABC transporter permease [Escherichia coli O157:H7 str. Sakai]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6G4C4B1, A0AAN1S4N3
      Conserved Domains (1) summary
      COG0601
      Location:2 → 324
      DppB; ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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