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    GSPATT00005516001 uncharacterized protein [ Paramecium tetraurelia ]

    Gene ID: 5015452, updated on 23-Nov-2023

    Summary

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    Gene symbol
    GSPATT00005516001
    Gene description
    uncharacterized protein
    Locus tag
    GSPATT00005516001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Paramecium tetraurelia (strain: Stock d4-2)
    Lineage
    Eukaryota; Sar; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium
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    Genomic context

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    See GSPATT00005516001 in Genome Data Viewer
    Location:
    chromosome: undetermined
    Exon count:
    3

    NW_001798989.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001798989.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Aury JM, et al. Nature, 2006 Nov 9. PMID 17086204
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5S rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001798989.1 Reference assembly

      Range
      109143..110239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001429631.2 → XP_001429668.1  uncharacterized protein GSPATT00005516001 [Paramecium tetraurelia]

      See identical proteins and their annotated locations for XP_001429668.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0BUQ3
      Conserved Domains (3) summary
      PTZ00069
      Location:1 → 298
      PTZ00069; 60S ribosomal protein L5; Provisional
      pfam00861
      Location:26 → 168
      Ribosomal_L18p; Ribosomal L18p/L5e family
      pfam14204
      Location:190 → 212
      Ribosomal_L18_c; Ribosomal L18 C-terminal region
    Nucleotide Protein
    Heading Accession and Version

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