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    tmprss5 transmembrane serine protease 5 [ Astatotilapia calliptera (eastern happy) ]

    Gene ID: 113036006, updated on 12-Sep-2024

    Summary

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    Gene symbol
    tmprss5
    Gene description
    transmembrane serine protease 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Astatotilapia calliptera
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
    Orthologs
    human zebrafish all
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    Genomic context

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    See tmprss5 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current fAstCal1.2 (GCF_900246225.1) 14 NC_039315.1 (12438905..12451978, complement)

    Chromosome 14 - NC_039315.1Genomic Context describing neighboring genes Neighboring gene DIX domain containing 1a Neighboring gene PIH1 domain containing 2 Neighboring gene zinc finger and BTB domain containing 16b Neighboring gene neural cell adhesion molecule 1b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039315.1 Chromosome 14 Reference fAstCal1.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protease serine 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAstCal1.2 Primary Assembly

    Genomic

    1. NC_039315.1 Reference fAstCal1.2 Primary Assembly

      Range
      12438905..12451978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026191979.1 → XP_026047764.1  transmembrane protease serine 5 isoform X2

      UniProtKB/TrEMBL
      A0A3P8P443
      Conserved Domains (2) summary
      smart00020
      Location:220 → 453
      Tryp_SPc; Trypsin-like serine protease
      pfam15494
      Location:120 → 216
      SRCR_2; Scavenger receptor cysteine-rich domain

    2. XM_026191980.1 → XP_026047765.1  transmembrane protease serine 5 isoform X3

    3. XM_026191978.1 → XP_026047763.1  transmembrane protease serine 5 isoform X1

      UniProtKB/TrEMBL
      A0A3P8P443
    Nucleotide Protein
    Heading Accession and Version

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