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    Jade1 jade family PHD finger 1 [ Urocitellus parryii (Arctic ground squirrel) ]

    Gene ID: 113184268, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Jade1
    Gene description
    jade family PHD finger 1
    See related
    Ensembl:ENSUPAG00010021308
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Urocitellus parryii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
    Orthologs
    human mouse all
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    Genomic context

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    See Jade1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020539970.1 (2937286..2988744, complement)

    NW_020539970.1Genomic Context describing neighboring genes Neighboring gene sodium channel and clathrin linker 1-like Neighboring gene sodium channel and clathrin linker 1 Neighboring gene progesterone receptor membrane component 2 Neighboring gene La ribonucleoprotein 1B Neighboring gene major facilitator superfamily domain containing 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020539970 Unplaced Scaffold Reference ASM342692v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jade-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM342692v1

    Genomic

    1. NW_020539970.1 Reference ASM342692v1

      Range
      2937286..2988744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026390889.1 → XP_026246674.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A8D2IKT1
      Related
      ENSUPAP00010026939.1, ENSUPAT00010030667.1
      Conserved Domains (2) summary
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
      cl26518
      Location:99 → 529
      EPL1; Enhancer of polycomb-like

    2. XM_026390893.1 → XP_026246678.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A8D2IKT1
      Conserved Domains (2) summary
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
      cl26518
      Location:99 → 529
      EPL1; Enhancer of polycomb-like

    3. XM_026390895.1 → XP_026246680.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A8D2IKT1
      Conserved Domains (2) summary
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
      cl26518
      Location:99 → 529
      EPL1; Enhancer of polycomb-like

    4. XM_026390891.1 → XP_026246676.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A8D2IKT1
      Related
      ENSUPAP00010026943.1, ENSUPAT00010030672.1
      Conserved Domains (2) summary
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
      cl26518
      Location:99 → 529
      EPL1; Enhancer of polycomb-like

    5. XM_026390892.1 → XP_026246677.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A8D2IKT1
      Conserved Domains (2) summary
      cd15671
      Location:258 → 368
      ePHD_JADE; Extended PHD finger found in protein Jade-1, Jade-2, Jade-3 and similar proteins
      cl26518
      Location:99 → 529
      EPL1; Enhancer of polycomb-like

    6. XM_026390894.1 → XP_026246679.1  protein Jade-1 isoform X2

      Conserved Domains (2) summary
      cd15704
      Location:200 → 317
      ePHD_JADE1; Extended PHD finger found in protein Jade-1 and similar proteins
      cl26518
      Location:44 → 474
      EPL1; Enhancer of polycomb-like
    Nucleotide Protein
    Heading Accession and Version

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