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    kin17 kin17 DNA and RNA binding protein [ Frankliniella occidentalis (western flower thrips) ]

    Gene ID: 113206700, updated on 15-May-2024

    Summary

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    Gene symbol
    kin17
    Gene description
    kin17 DNA and RNA binding protein
    Locus tag
    FOCC_FOCC003936
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Frankliniella occidentalis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Frankliniella
    Orthologs
    fruit fly all
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    Genomic context

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    See kin17 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Focc_3.1 (GCF_000697945.3) Unplaced Scaffold NW_026267155.1 (2474592..2476793)
    100 previous assembly Focc_2.1 (GCF_000697945.2) Unplaced Scaffold NW_020292340.1 (38612..40820)

    NW_026267155.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113206743 Neighboring gene uncharacterized LOC113206745 Neighboring gene PRKC apoptosis WT1 regulator protein Neighboring gene NADH-cytochrome b5 reductase-like Neighboring gene histone chaperone asf1-like Neighboring gene E3 ubiquitin-protein ligase Fancl

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the salivary gland transcriptome of Frankliniella occidentalis. Stafford-Banks CA, et al. PLoS One, 2014. PMID 24736614, Free PMC Article
    2. Phylogenomics and the evolution of hemipteroid insects. Johnson KP, et al. Proc Natl Acad Sci U S A, 2018 Dec 11. PMID 30478043, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA/RNA-binding protein KIN17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Frankliniella occidentalis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Focc_3.1 Primary Assembly

    Genomic

    1. NW_026267155.1 Reference Focc_3.1 Primary Assembly

      Range
      2474592..2476793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026422908.2 → XP_026278693.1  DNA/RNA-binding protein KIN17

      UniProtKB/TrEMBL
      A0A6J1SDD6
      Conserved Domains (5) summary
      cd13155
      Location:336 → 389
      KOW_KIN17; KOW_Kin17 is a RNA-binding motif
      sd00020
      Location:28 → 50
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam10357
      Location:55 → 177
      Kin17_mid; Domain of Kin17 curved DNA-binding protein
      pfam12171
      Location:26 → 51
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      pfam18131
      Location:273 → 325
      KN17_SH3; KN17 SH3-like C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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