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    rcn1.L reticulocalbin 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 779277, updated on 20-Nov-2024

    Summary

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    Official Symbol
    rcn1.L
    Official Full Name
    reticulocalbin 1 L homeolog
    Primary source
    Xenbase:XB-GENE-865955
    Locus tag
    XELAEV_18021970mg
    See related
    EnsemblRapid:ENSXLAG00005019798 AllianceGenome:Xenbase:XB-GENE-865955
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rcn1
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be located in endoplasmic reticulum. Orthologous to human RCN1 (reticulocalbin 1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See rcn1.L in Genome Data Viewer
    Location:
    chromosome: 4L
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (13733816..13748810, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (13210115..13224081, complement)

    Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene WT1 transcription factor L homeolog Neighboring gene uncharacterized LOC121402931 Neighboring gene uncharacterized LOC121402932 Neighboring gene uncharacterized LOC121402933 Neighboring gene paired box 6 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC154498

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    reticulocalbin 1 L homeolog
    Names
    reticulocalbin 1, EF-hand calcium binding domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001096897.1 → NP_001090366.1  reticulocalbin 1 L homeolog precursor

      See identical proteins and their annotated locations for NP_001090366.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123245
      UniProtKB/TrEMBL
      A0A974D441, Q0IHA0
      Related
      ENSXLAP00005058131.1, ENSXLAT00005059488.1
      Conserved Domains (2) summary
      pfam13499
      Location:163 → 223
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:199 → 264
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      13733816..13748810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018256984.2 → XP_018112473.1  reticulocalbin 1 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974D441, Q0IHA0

    2. XM_018256985.2 → XP_018112474.1  reticulocalbin 1 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974D441, Q0IHA0

    3. XM_018256986.2 → XP_018112475.1  reticulocalbin 1 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974D441, Q0IHA0
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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