XB1000829.S uncharacterized XB1000829 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Symbol: XB1000829.S
Full Name: uncharacterized XB1000829 S homeolog
Primary source: Xenbase:XB-GENE-1000834
Locus tag: XELAEV_18025384mg
See related: EnsemblRapid:ENSXLAG00005009512 AllianceGenome:Xenbase:XB-GENE-1000834
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: LOC100124812.S
Summary: Predicted to enable estradiol 17-beta-dehydrogenase [NAD(P)+] activity. Predicted to act upstream of or within estrogen biosynthetic process. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4S

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (83740539..83752425, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4S	NC_030731.1 (77420367..77432219, complement)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables estradiol 17-beta-dehydrogenase [NAD(P)+] activity	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within estrogen biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC447768

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094438.1 → NP_001087907.1 uncharacterized protein LOC447768

See identical proteins and their annotated locations for NP_001087907.1

Status: PREDICTED

Source sequence(s)

BC082456

UniProtKB/TrEMBL

A0A974HLU9, Q640Y3

Related

ENSXLAP00005027782.1, ENSXLAT00005028516.1

Conserved Domains (2) summary

cd09806
Location:6 → 263

type1_17beta-HSD-like_SDR_c; human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs

pfam00106
Location:6 → 200

adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

83740539..83752425 complement

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GenBank, FASTA, Sequence Viewer (Graphics)