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    PICST_90103 predicted protein [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4840193, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PICST_90103
    Gene description
    predicted protein
    Locus tag
    PICST_90103
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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    Genomic context

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    See PICST_90103 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Sequence:
    Chromosome: 6; NC_009046.1 (595288..597192, complement)

    Chromosome 6 - NC_009046.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene vacuolar sorting protein Neighboring gene putative cell segregation machinery component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009046.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009046.1 Reference assembly

      Range
      595288..597192 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001385773.1 → XP_001385810.2  predicted protein [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001385810.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A3LXC1
      Conserved Domains (4) summary
      COG2319
      Location:151 → 330
      WD40; WD40 repeat [General function prediction only]
      pfam10313
      Location:284 → 330
      DUF2415; uncharacterized protein domain (DUF2415)
      sd00039
      Location:148 → 186
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:168 → 316
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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