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    ci-arfgap-11 zinc finger protein Ci-ArfGAP-11 [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 723804, updated on 21-Dec-2023

    Summary

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    Gene symbol
    ci-arfgap-11
    Gene description
    zinc finger protein Ci-ArfGAP-11
    See related
    Ensembl:ENSCING00000006711
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See ci-arfgap-11 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 2 NC_020167.2 (7130227..7159647, complement)

    Chromosome 2 - NC_020167.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113475813 Neighboring gene hexokinase-2-like Neighboring gene protein PXR1-like Neighboring gene UBX domain-containing protein 11-like Neighboring gene cytochrome P450 4V2 Neighboring gene KICSTOR complex protein ITFG2 Neighboring gene uncharacterized LOC104265429 Neighboring gene uncharacterized LOC100178581 Neighboring gene uncharacterized LOC100180193

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020167.2 Chromosome 2 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. Miwata K, et al. Dev Biol, 2006 Apr 15. PMID 16519883
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein Ci-ArfGAP-11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001047990.1 → NP_001041455.1  zinc finger protein Ci-ArfGAP-11

      See identical proteins and their annotated locations for NP_001041455.1

      Status: PROVISIONAL

      Source sequence(s)
      BR000184
      UniProtKB/TrEMBL
      A0A1W2VPK9, F7A8A6, Q1RL50
      Related
      ENSCINP00000013767, ENSCINT00000013767
      Conserved Domains (8) summary
      cd07604
      Location:34 → 251
      BAR_ASAPs; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins
      cd11821
      Location:929 → 981
      SH3_ASAP; Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins
      cd00204
      Location:590 → 681
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13251
      Location:300 → 406
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      pfam00169
      Location:309 → 395
      PH; PH domain
      pfam01412
      Location:428 → 541
      ArfGap; Putative GTPase activating protein for Arf
      pfam12796
      Location:556 → 659
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:589 → 626
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020167.2 Reference KH Primary Assembly

      Range
      7130227..7159647 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026839606.1 → XP_026695407.1  zinc finger protein Ci-ArfGAP-11 isoform X3

      Conserved Domains (7) summary
      cd07604
      Location:34 → 251
      BAR_ASAPs; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins
      cd11821
      Location:906 → 958
      SH3_ASAP; Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins
      cd00204
      Location:590 → 681
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd13251
      Location:300 → 406
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:589 → 626
      ANK; ANK repeat [structural motif]
      pfam01412
      Location:428 → 541
      ArfGap; Putative GTPase activating protein for Arf
      cl27975
      Location:775 → 905
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    2. XM_026839600.1 → XP_026695401.1  zinc finger protein Ci-ArfGAP-11 isoform X1

    3. XM_026839602.1 → XP_026695403.1  zinc finger protein Ci-ArfGAP-11 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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