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    LOC113665288 regulator of nonsense transcripts 1-like [ Pocillopora damicornis ]

    Gene ID: 113665288, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC113665288
    Gene description
    regulator of nonsense transcripts 1-like
    Locus tag
    pdam_00004771
    See related
    EnsemblRapid:LOC113665288
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pocillopora damicornis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Pocillopora
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    Genomic context

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    See LOC113665288 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    100 current ASM370409v1 (GCF_003704095.1) Unplaced Scaffold NW_020844153.1 (654000..668432)

    NW_020844153.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113665296 Neighboring gene haloacid dehalogenase-like hydrolase domain-containing 5 Neighboring gene arachidonate 5-lipoxygenase-like Neighboring gene phenylalanine--tRNA ligase, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020844153 Unplaced Scaffold Reference ASM370409v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pocillopora damicornis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM370409v1 Primary Assembly

    Genomic

    1. NW_020844153.1 Reference ASM370409v1 Primary Assembly

      Range
      654000..668432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027180959.1 → XP_027036760.1  regulator of nonsense transcripts 1-like

      UniProtKB/TrEMBL
      A0A3M6UEA3
      Related
      XP_027036760.1, XM_027180959.1
    Nucleotide Protein
    Heading Accession and Version

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