U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LAC4 Beta-galactosidase (Lactase) [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4837088, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LAC4
    Gene description
    Beta-galactosidase (Lactase)
    Locus tag
    PICST_30036
    Gene type
    protein coding
    RNA name
    Beta-galactosidase (Lactase)
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LAC4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_009042.1 (1783793..1786915)

    Chromosome 2 - NC_009042.1Genomic Context describing neighboring genes Neighboring gene monocarboxylate permease homolog Neighboring gene Lactose permease Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_009042.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lactose catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of beta-galactosidase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Names
    Beta-galactosidase (Lactase)
    XP_001382569.2
    • Beta-galactosidase (Lactase) (BGAL)
      go_component beta-galactosidase complex
      go_funtion hydrolase activity, hydrolyzing O-glycosyl compounds; beta-galactosidase activity
      go_process carbohydrate metabolism

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009042.1 Reference assembly

      Range
      1783793..1786915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001382532.1 → XP_001382569.2  Beta-galactosidase (Lactase) [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001382569.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A3LPQ6
      Conserved Domains (6) summary
      PRK10340
      Location:16 → 1021
      ebgA; cryptic beta-D-galactosidase subunit alpha; Reviewed
      pfam00703
      Location:207 → 306
      Glyco_hydro_2; Glycosyl hydrolases family 2
      pfam02837
      Location:37 → 200
      Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
      pfam02929
      Location:746 → 1016
      Bgal_small_N; Beta galactosidase small chain
      pfam16353
      Location:621 → 710
      DUF4981; Domain of unknown function(DUF4981)
      cl23725
      Location:308 → 614
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials