U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    Zranb1 zinc finger RANBP2-type containing 1 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100769882, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Zranb1
    Gene description
    zinc finger RANBP2-type containing 1
    Locus tag
    I79_014919
    See related
    Ensembl:ENSCGRG00015001674
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Zranb1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614349.1 (290498..327353, complement)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (67855490..67909169, complement)

    NW_003614349.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A3-like Neighboring gene C-terminal binding protein 2 Neighboring gene 60S ribosomal protein L35-like Neighboring gene uncharacterized LOC103161632 Neighboring gene 40S ribosomal protein S29-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin thioesterase ZRANB1
    Names
    Ubiquitin thioesterase Zranb1
    zinc finger, RAN-binding domain containing 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003614349.1 Reference CriGri_1.0 Primary Assembly

      Range
      290498..327353 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003507281.4 → XP_003507329.2  ubiquitin thioesterase ZRANB1 isoform X1

      UniProtKB/TrEMBL
      A0A8C2N179
      Conserved Domains (4) summary
      smart00547
      Location:178 → 201
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:114 → 133
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:464 → 612
      OTU; OTU-like cysteine protease
      pfam18418
      Location:272 → 367
      AnkUBD; Ankyrin ubiquitin-binding domain

    2. XM_016978031.2 → XP_016833520.1  ubiquitin thioesterase ZRANB1 isoform X2

      UniProtKB/TrEMBL
      A0A9J7JL49
      Conserved Domains (1) summary
      pfam02338
      Location:112 → 260
      OTU; OTU-like cysteine protease

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048596.1 Alternate CriGri-PICRH-1.0

      Range
      67855490..67909169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027409132.2 → XP_027264933.1  ubiquitin thioesterase ZRANB1 isoform X3

      UniProtKB/TrEMBL
      A0A9J7JE96
      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain

    2. XM_027409131.2 → XP_027264932.1  ubiquitin thioesterase ZRANB1 isoform X1

      UniProtKB/TrEMBL
      A0A8C2N179
      Related
      ENSCGRP00015050098.1, ENSCGRT00015048900.1
      Conserved Domains (4) summary
      smart00547
      Location:178 → 201
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:114 → 133
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:464 → 612
      OTU; OTU-like cysteine protease
      pfam18418
      Location:272 → 367
      AnkUBD; Ankyrin ubiquitin-binding domain

    3. XM_027409133.2 → XP_027264934.1  ubiquitin thioesterase ZRANB1 isoform X2

      UniProtKB/TrEMBL
      A0A9J7JL49
      Conserved Domains (1) summary
      pfam02338
      Location:112 → 260
      OTU; OTU-like cysteine protease
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.