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    CDKL5 cyclin dependent kinase like 5 [ Bos indicus x Bos taurus (hybrid cattle) ]

    Gene ID: 113888231, updated on 15-Mar-2024

    Summary

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    Gene symbol
    CDKL5
    Gene description
    cyclin dependent kinase like 5
    See related
    Ensembl:ENSBIXG00005005323
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos indicus x Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CDKL5 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current UOA_Brahman_1 (GCF_003369695.1) X NC_040105.1 (16160935..16339512)

    Chromosome X - NC_040105.1Genomic Context describing neighboring genes Neighboring gene BEN domain containing 2 Neighboring gene Scm polycomb group protein like 2 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene gap junction alpha-1 protein-like Neighboring gene transfer RNA valine (anticodon GAC) Neighboring gene retinoschisin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_040105.1 Chromosome X Reference UOA_Brahman_1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of axon extension IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of dendrite development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in dendrite cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-dependent kinase-like 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bos indicus x Bos taurus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UOA_Brahman_1

    Genomic

    1. NC_040105.1 Reference UOA_Brahman_1

      Range
      16160935..16339512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027535523.1 → XP_027391324.1  cyclin-dependent kinase-like 5 isoform X1

      UniProtKB/TrEMBL
      A0A4W2IHK8
      Related
      ENSBIXP00005043599.1, ENSBIXT00005040158.1

    2. XM_027535526.1 → XP_027391327.1  cyclin-dependent kinase-like 5 isoform X2

      UniProtKB/TrEMBL
      A0A4W2IHJ0, A0A4W2IJC0
      Related
      ENSBIXP00005043570.1, ENSBIXT00005052607.1

    3. XM_027535524.1 → XP_027391325.1  cyclin-dependent kinase-like 5 isoform X1

      UniProtKB/TrEMBL
      A0A4W2IHK8

    4. XM_027535525.1 → XP_027391326.1  cyclin-dependent kinase-like 5 isoform X1

      UniProtKB/TrEMBL
      A0A4W2IHK8
    Nucleotide Protein
    Heading Accession and Version

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