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    OCRL OCRL inositol polyphosphate-5-phosphatase [ Corapipo altera (White-ruffed manakin) ]

    Gene ID: 113956097, updated on 3-Aug-2024

    Summary

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    Gene symbol
    OCRL
    Gene description
    OCRL inositol polyphosphate-5-phosphatase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corapipo altera
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Corapipo
    Orthologs
    human mouse all
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    Genomic context

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    See OCRL in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current ASM394572v1 (GCF_003945725.1) Unplaced Scaffold NW_020884945.1 (567831..590040)

    NW_020884945.1Genomic Context describing neighboring genes Neighboring gene NHS like 2 Neighboring gene peptidylprolyl cis/trans isomerase, NIMA-interacting 4 Neighboring gene ERCC excision repair 6 like, spindle assembly checkpoint helicase Neighboring gene X-prolyl aminopeptidase 2 Neighboring gene SAM and SH3 domain containing 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020884945 Unplaced Scaffold Reference ASM394572v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol phosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: inositol polyphosphate 5-phosphatase OCRL-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corapipo altera Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM394572v1

    Genomic

    1. NW_020884945.1 Reference ASM394572v1

      Range
      567831..590040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027662293.1 → XP_027518094.1  LOW QUALITY PROTEIN: inositol polyphosphate 5-phosphatase OCRL-1

    Nucleotide Protein
    Heading Accession and Version

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