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    NR1H4 nuclear receptor subfamily 1 group H member 4 [ Empidonax traillii (willow flycatcher) ]

    Gene ID: 114058427, updated on 3-Aug-2024

    Summary

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    Gene symbol
    NR1H4
    Gene description
    nuclear receptor subfamily 1 group H member 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Empidonax traillii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Tyrannidae; Empidonax
    Orthologs
    human mouse all
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    Genomic context

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    See NR1H4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current ASM303162v1 (GCF_003031625.1) Unplaced Scaffold NW_020955365.1 (293947..340411)

    NW_020955365.1Genomic Context describing neighboring genes Neighboring gene SCY1 like pseudokinase 2 Neighboring gene solute carrier family 17 member 8 Neighboring gene uncharacterized LOC114058429 Neighboring gene growth arrest specific 2 like 3 Neighboring gene anoctamin 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020955365 Unplaced Scaffold Reference ASM303162v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables bile acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in bile acid signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bile acid receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Empidonax traillii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM303162v1

    Genomic

    1. NW_020955365.1 Reference ASM303162v1

      Range
      293947..340411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027885780.1 → XP_027741581.1  bile acid receptor isoform X1

    2. XM_027885777.1 → XP_027741578.1  bile acid receptor isoform X1

    3. XM_027885782.1 → XP_027741583.1  bile acid receptor isoform X3

    4. XM_027885781.1 → XP_027741582.1  bile acid receptor isoform X2

    5. XM_027885779.1 → XP_027741580.1  bile acid receptor isoform X1

    6. XM_027885778.1 → XP_027741579.1  bile acid receptor isoform X1

    7. XM_027885783.1 → XP_027741584.1  bile acid receptor isoform X3

    Nucleotide Protein
    Heading Accession and Version

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