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    LOC5520389 titin [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5520389, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5520389
    Gene description
    titin
    Locus tag
    NEMVEDRAFT_v1g222726
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5520389 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 1 NC_064034.1 (8256499..8275049)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834405.1 (1972337..1985660, complement)

    Chromosome 1 - NC_064034.1Genomic Context describing neighboring genes Neighboring gene protein lifeguard 4 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-A Neighboring gene acetylserotonin O-methyltransferase Neighboring gene pyroglutamylated RF-amide peptide receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    titin
    Names
    FYVE, RhoGEF and PH domain-containing protein 6
    predicted protein
    proteoglycan 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064034.1 Reference jaNemVect1.1

      Range
      8256499..8275049
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032365352.2 → XP_032221243.2  titin isoform X1

    2. XM_048732244.1 → XP_048588201.1  titin isoform X2

    Nucleotide Protein
    Heading Accession and Version

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