U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC5513350 nuclear pore complex protein Nup93 [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5513350, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC5513350
    Gene description
    nuclear pore complex protein Nup93
    Locus tag
    NEMVEDRAFT_v1g242660
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC5513350 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 13 NC_064046.1 (2634192..2649845)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834345.1 (131543..147199)

    Chromosome 13 - NC_064046.1Genomic Context describing neighboring genes Neighboring gene repressor of RNA polymerase III transcription MAF1 homolog Neighboring gene uncharacterized LOC116618786 Neighboring gene pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial Neighboring gene plasmanylethanolamine desaturase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear pore complex protein Nup93
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064046.1 Reference jaNemVect1.1

      Range
      2634192..2649845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001633564.3 → XP_001633614.1  nuclear pore complex protein Nup93

      See identical proteins and their annotated locations for XP_001633614.1

      UniProtKB/TrEMBL
      A7S3U8
      Conserved Domains (1) summary
      pfam04097
      Location:216 → 802
      Nic96; Nup93/Nic96
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials