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    UPF1 UPF1 RNA helicase and ATPase [ Eumetopias jubatus (Steller sea lion) ]

    Gene ID: 114196369, updated on 15-Mar-2024

    Summary

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    Gene symbol
    UPF1
    Gene description
    UPF1 RNA helicase and ATPase
    See related
    EnsemblRapid:ENSEJUG00000014460
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eumetopias jubatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Eumetopias
    Orthologs
    human mouse all
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    Genomic context

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    See UPF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current ASM402803v1 (GCF_004028035.1) Unplaced Scaffold NW_020998748.1 (2652634..2689928, complement)

    NW_020998748.1Genomic Context describing neighboring genes Neighboring gene ceramide synthase 1 Neighboring gene growth differentiation factor 1 Neighboring gene cartilage oligomeric matrix protein Neighboring gene CREB regulated transcription coactivator 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020998748 Unplaced Scaffold Reference ASM402803v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Eumetopias jubatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM402803v1 Primary Assembly

    Genomic

    1. NW_020998748.1 Reference ASM402803v1 Primary Assembly

      Range
      2652634..2689928 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028086994.1 → XP_027942795.1  regulator of nonsense transcripts 1 isoform X1

      Related
      ENSEJUP00000019597.1, ENSEJUT00000021917.1
      Conserved Domains (2) summary
      COG1112
      Location:146 → 921
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      cd18039
      Location:482 → 715
      DEXXQc_UPF1; DEXXQ-box helicase domain of UPF1

    2. XM_028086995.1 → XP_027942796.1  regulator of nonsense transcripts 1 isoform X2

      Conserved Domains (2) summary
      COG1112
      Location:146 → 910
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      cd18039
      Location:471 → 704
      DEXXQc_UPF1; DEXXQ-box helicase domain of UPF1
    Nucleotide Protein
    Heading Accession and Version

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