U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    ASPSCR1 ASPSCR1 tether for SLC2A4, UBX domain containing [ Bos taurus (domestic cattle) ]

    Gene ID: 515670, updated on 30-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    ASPSCR1provided by VGNC
    Official Full Name
    ASPSCR1 tether for SLC2A4, UBX domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:97242
    See related
    EnsemblRapid:ENSBTAG00070010900
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ASPSCR1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (50892632..50920546, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene Rac family small GTPase 3 Neighboring gene leucine rich repeat containing 45 Neighboring gene centromere protein X Neighboring gene uncharacterized LOC132343110 Neighboring gene microRNA mir-2346 Neighboring gene uncharacterized LOC101907887 Neighboring gene notum, palmitoleoyl-protein carboxylesterase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC159635

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tether containing UBX domain for GLUT4
    Names
    ASPSCR1, UBX domain containing tether for SLC2A4
    alveolar soft part sarcoma chromosome region, candidate 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104980.1 → NP_001098450.1  tether containing UBX domain for GLUT4

      See identical proteins and their annotated locations for NP_001098450.1

      Status: PROVISIONAL

      Source sequence(s)
      BC142388
      UniProtKB/TrEMBL
      A5PK76, G3MYB8
      Conserved Domains (2) summary
      pfam11470
      Location:15 → 78
      TUG-UBL1; TUG ubiquitin-like domain
      cl00155
      Location:387 → 458
      UBQ; Ubiquitin-like proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50892632..50920546 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059878032.1 → XP_059734015.1  tether containing UBX domain for GLUT4 isoform X1

      UniProtKB/TrEMBL
      F1MTZ8, G3MYB8
      Related
      ENSBTAP00070014612.1, ENSBTAT00070024550.1

    2. XM_024980107.2 → XP_024835875.1  tether containing UBX domain for GLUT4 isoform X2

      UniProtKB/TrEMBL
      G3MYB8
      Related
      ENSBTAP00070014609.1, ENSBTAT00070024542.1
      Conserved Domains (1) summary
      cl00155
      Location:310 → 381
      UBQ; Ubiquitin-like proteins

    3. XM_024980106.2 → XP_024835874.1  tether containing UBX domain for GLUT4 isoform X2

      UniProtKB/TrEMBL
      G3MYB8
      Conserved Domains (1) summary
      cl00155
      Location:310 → 381
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials