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    SMP1 seed maturation protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820482, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SMP1
    Official Full Name
    seed maturation protein
    Primary source
    TAIR:AT3G12960
    Locus tag
    AT3G12960
    See related
    Araport:AT3G12960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGH6.8; seed maturation protein 1
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    Genomic context

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    See SMP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (4136453..4136828)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Trypsin family protein Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Late Embryogenesis Abundant (LEA) protein putative interactors using phage display. Kushwaha R, et al. Int J Mol Sci, 2012. PMID 22837651, Free PMC Article
    2. Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development. Becerra C, et al. BMC Genomics, 2006 Feb 28. PMID 16504176, Free PMC Article
    3. Substrates of the Arabidopsis thaliana protein isoaspartyl methyltransferase 1 identified using phage display and biopanning. Chen T, et al. J Biol Chem, 2010 Nov 26. PMID 20870712, Free PMC Article
    4. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112133.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein folding chaperone IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maintenance of seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to heat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to heat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seed dormancy process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    seed maturation protein
    NP_187902.1
    • unknown protein; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4136453..4136828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112133.4 → NP_187902.1  seed maturation protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187902.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VH69, Q9LE44
      UniProtKB/TrEMBL
      A0A384KCD3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LE44.1

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