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    LOC114305091 protein NLP6-like [ Camellia sinensis ]

    Gene ID: 114305091, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114305091
    Gene description
    protein NLP6-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camellia sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC114305091 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021037131.1 (2876..6014, complement)

    NW_021037131.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021037131 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NLP6-like; protein NLP7-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AHAU_CSS_1 Primary Assembly

    Genomic

    1. NW_021037131.1 Reference AHAU_CSS_1 Primary Assembly

      Range
      2876..6014 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028250214.1 → XP_028106015.1  protein NLP6-like isoform X3

      Conserved Domains (2) summary
      smart00666
      Location:974 → 1054
      PB1; PB1 domain
      pfam02042
      Location:666 → 703
      RWP-RK; RWP-RK domain

    2. XM_028250213.1 → XP_028106014.1  protein NLP7-like isoform X2

      Conserved Domains (2) summary
      smart00666
      Location:1080 → 1160
      PB1; PB1 domain
      pfam02042
      Location:771 → 818
      RWP-RK; RWP-RK domain

    3. XM_028250212.1 → XP_028106013.1  protein NLP7-like isoform X1

      Conserved Domains (2) summary
      smart00666
      Location:1089 → 1169
      PB1; PB1 domain
      pfam02042
      Location:771 → 818
      RWP-RK; RWP-RK domain
    Nucleotide Protein
    Heading Accession and Version

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