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    LOC114434231 regulator of nonsense transcripts 1 [ Parambassis ranga (Indian glassy fish) ]

    Gene ID: 114434231, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114434231
    Gene description
    regulator of nonsense transcripts 1
    See related
    Ensembl:ENSPRNG00000017772
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Parambassis ranga
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Ambassidae; Parambassis
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    Genomic context

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    See LOC114434231 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current fParRan2.1 (GCF_900634625.1) 4 NC_041025.1 (17258626..17267548)

    Chromosome 4 - NC_041025.1Genomic Context describing neighboring genes Neighboring gene LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene pyroglutamyl-peptidase I Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 Neighboring gene homer scaffold protein 3b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041025.1 Chromosome 4 Reference fParRan2.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Parambassis ranga Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fParRan2.1

    Genomic

    1. NC_041025.1 Reference fParRan2.1

      Range
      17258626..17267548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028403269.1 → XP_028259070.1  regulator of nonsense transcripts 1 isoform X1

      UniProtKB/TrEMBL
      A0A6P7HTN2
      Related
      ENSPRNP00000036025.1, ENSPRNT00000038336.1
      Conserved Domains (2) summary
      COG1112
      Location:126 → 891
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      cd18039
      Location:452 → 685
      DEXXQc_UPF1; DEXXQ-box helicase domain of UPF1

    2. XM_028403270.1 → XP_028259071.1  regulator of nonsense transcripts 1 isoform X2

      UniProtKB/TrEMBL
      A0A6P7I3B5
      Related
      ENSPRNP00000036031.1, ENSPRNT00000038342.1
      Conserved Domains (2) summary
      COG1112
      Location:126 → 890
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      cd18039
      Location:451 → 684
      DEXXQc_UPF1; DEXXQ-box helicase domain of UPF1
    Nucleotide Protein
    Heading Accession and Version

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