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    LOC114565572 regulator of nonsense transcripts 1-like [ Perca flavescens (yellow perch) ]

    Gene ID: 114565572, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114565572
    Gene description
    regulator of nonsense transcripts 1-like
    Locus tag
    EPR50_G00125240
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Perca flavescens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
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    Genomic context

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    See LOC114565572 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current PFLA_1.0 (GCF_004354835.1) 12 NC_041342.1 (12494468..12516900)

    Chromosome 12 - NC_041342.1Genomic Context describing neighboring genes Neighboring gene transcription factor jun-D-like Neighboring gene pyroglutamyl-peptidase I Neighboring gene homer protein homolog 3-like Neighboring gene uncharacterized LOC114565398 Neighboring gene transfer RNA asparagine (anticodon GUU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041342.1 Chromosome 12 Reference PFLA_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PFLA_1.0 Primary Assembly

    Genomic

    1. NC_041342.1 Reference PFLA_1.0 Primary Assembly

      Range
      12494468..12516900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028593709.1 → XP_028449510.1  regulator of nonsense transcripts 1-like

      UniProtKB/TrEMBL
      A0A484CPJ1
      Conserved Domains (3) summary
      COG1112
      Location:124 → 888
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      pfam08430
      Location:930 → 1070
      Forkhead_N; Forkhead N-terminal region
      cd18039
      Location:449 → 682
      DEXXQc_UPF1; DEXXQ-box helicase domain of UPF1
    Nucleotide Protein
    Heading Accession and Version

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