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    CALCOCO1 calcium binding and coiled-coil domain 1 [ Physeter macrocephalus (sperm whale) ]

    Gene ID: 114486510, updated on 15-Jan-2025

    Summary

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    Gene symbol
    CALCOCO1
    Gene description
    calcium binding and coiled-coil domain 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Physeter macrocephalus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
    Orthologs
    human mouse all
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    Genomic context

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    See CALCOCO1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2025_01 current ASM283717v5 (GCF_002837175.3) 6 NC_041219.1 (86707962..86716858)
    102 previous assembly ASM283717v2 (GCF_002837175.2) 6 NC_041219.1 (86707962..86716692)

    Chromosome 6 - NC_041219.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L17-like Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like Neighboring gene small nucleolar RNA SNORD86 Neighboring gene ATP synthase membrane subunit c locus 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-binding and coiled-coil domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2025_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM283717v5 Primary Assembly

    Genomic

    1. NC_041219.1 Reference ASM283717v5 Primary Assembly

      Range
      86707962..86716858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028491501.2 → XP_028347302.1  calcium-binding and coiled-coil domain-containing protein 1

      UniProtKB/TrEMBL
      A0A455BEX7
      Conserved Domains (1) summary
      pfam07888
      Location:79 → 216
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
    Nucleotide Protein
    Heading Accession and Version

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