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    yqcC DUF446 domain-containing protein YqcC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946027, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yqcC
    Official Full Name
    DUF446 domain-containing protein YqcC
    Primary source
    ECOCYC:G7450
    Locus tag
    b2792
    See related
    ASAP:ABE-0009152
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2786
    Summary
    Transcription of yqcC is induced upon biofilm formation compared to planktonic growth in both exponential and stationary phase. [More information is available at EcoCyc: G7450].
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    Genomic context

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    Sequence:
    NC_000913.3 (2923784..2924113, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene galactarate/D-glucarate transporter GudP Neighboring gene putative flavodoxin YqcA Neighboring gene tRNA pseudouridine(65) synthase Neighboring gene ncRNA Neighboring gene SecY-interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Beloin C, et al. Mol Microbiol, 2004 Feb. PMID 14731270
    2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    3. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF446 domain-containing protein YqcC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2923784..2924113 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417272.1 DUF446 domain-containing protein YqcC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417272.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376WWQ2
      Conserved Domains (1) summary
      COG3098
      Location:1 → 109
      YqcC; Uncharacterized conserved protein YqcC, DUF446 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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