U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC114650229 matrix metalloproteinase-21-like [ Erpetoichthys calabaricus (reedfish) ]

    Gene ID: 114650229, updated on 23-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC114650229
    Gene description
    matrix metalloproteinase-21-like
    See related
    Ensembl:ENSECRG00000007595
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Erpetoichthys calabaricus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Erpetoichthys
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC114650229 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_02 current fErpCal1.3 (GCF_900747795.2) 1 NC_041394.2 (131386168..131404645, complement)
    100 previous assembly fErpCal1.1 (GCF_900747795.1) 1 NC_041394.1 (128010357..128028612, complement)

    Chromosome 1 - NC_041394.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127527065 Neighboring gene neurofilament medium chain a Neighboring gene dedicator of cytokinesis 5 Neighboring gene FtsJ RNA 2'-O-methyltransferase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    matrix metalloproteinase-21-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_900747795.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fErpCal1.3 Primary Assembly

    Genomic

    1. NC_041394.2 Reference fErpCal1.3 Primary Assembly

      Range
      131386168..131404645 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028799771.2 → XP_028655604.1  matrix metalloproteinase-21-like

      UniProtKB/TrEMBL
      A0A8C4S2S4, A0A8C4S447
      Related
      ENSECRP00000011404.1
      Conserved Domains (2) summary
      cd04278
      Location:180 → 331
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      cl02471
      Location:360 → 533
      HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases