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    TRIM46 tripartite motif containing 46 [ Podarcis muralis (Common wall lizard) ]

    Gene ID: 114586407, updated on 15-Mar-2024

    Summary

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    Gene symbol
    TRIM46
    Gene description
    tripartite motif containing 46
    See related
    Ensembl:ENSPMRG00000016070
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Podarcis muralis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM46 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current PodMur_1.0 (GCF_004329235.1) 16 NC_041327.1 (10247540..10273204)

    Chromosome 16 - NC_041327.1Genomic Context describing neighboring genes Neighboring gene dolichyl-phosphate mannosyltransferase subunit 3, regulatory Neighboring gene keratinocyte associated protein 2 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene uncharacterized LOC114586409 Neighboring gene uncharacterized LOC114586249 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene mucin 1, cell surface associated Neighboring gene mucin-1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041327.1 Chromosome 16 Reference PodMur_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 46

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Podarcis muralis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PodMur_1.0 Primary Assembly

    Genomic

    1. NC_041327.1 Reference PodMur_1.0 Primary Assembly

      Range
      10247540..10273204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028709816.1 → XP_028565649.1  tripartite motif-containing protein 46 isoform X2

      UniProtKB/TrEMBL
      A0A670JN14
      Related
      ENSPMRP00000024864.1, ENSPMRT00000026383.1
      Conserved Domains (5) summary
      smart00502
      Location:269 → 384
      BBC; B-Box C-terminal domain
      cd00063
      Location:443 → 523
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12895
      Location:530 → 733
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      pfam00643
      Location:221 → 262
      zf-B_box; B-box zinc finger
      cd16757
      Location:27 → 69
      RING-HC_TRIM46; RING finger, HC subclass, found in tripartite motif-containing protein 46 (TRIM46) and similar proteins

    2. XM_028709815.1 → XP_028565648.1  tripartite motif-containing protein 46 isoform X1

      UniProtKB/TrEMBL
      A0A670JN14
      Conserved Domains (5) summary
      smart00502
      Location:269 → 384
      BBC; B-Box C-terminal domain
      cd00063
      Location:443 → 523
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12895
      Location:530 → 733
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      pfam00643
      Location:221 → 262
      zf-B_box; B-box zinc finger
      cd16757
      Location:27 → 69
      RING-HC_TRIM46; RING finger, HC subclass, found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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