U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    KDM4B lysine demethylase 4B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 695760, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    KDM4Bprovided by VGNC
    Official Full Name
    lysine demethylase 4Bprovided by VGNC
    Primary source
    VGNC:VGNC:73930
    See related
    Ensembl:ENSMMUG00000012677
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    JMJD2B
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See KDM4B in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (4906085..5089153)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (5126828..5309815)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994613 Neighboring gene arrestin domain containing 5 Neighboring gene ubiquitin like with PHD and ring finger domains 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene protein tyrosine phosphatase receptor type S Neighboring gene 60S ribosomal protein L32 pseudogene Neighboring gene uncharacterized LOC114674029

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    lysine-specific demethylase 4B
    Names
    jumonji domain containing 2B
    NP_001253377.1
    XP_014978024.2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266448.2 → NP_001253377.1  lysine-specific demethylase 4B

      See identical proteins and their annotated locations for NP_001253377.1

      Status: PROVISIONAL

      Source sequence(s)
      JU333518
      UniProtKB/TrEMBL
      A0A1D5QCZ7, H9FRL4
      Related
      ENSMMUP00000045916.2, ENSMMUT00000067101.2
      Conserved Domains (5) summary
      smart00545
      Location:15 → 56
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:921 → 971
      TUDOR; Tudor domain
      pfam02373
      Location:176 → 292
      JmjC; JmjC domain, hydroxylase
      cd15576
      Location:683 → 788
      PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
      cd15714
      Location:797 → 906
      ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      4906085..5089153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015122538.2 → XP_014978024.2  lysine-specific demethylase 4B isoform X1

      UniProtKB/TrEMBL
      A0A1D5QCZ7, F7E2F6
      Related
      ENSMMUP00000016650.4, ENSMMUT00000017778.4
      Conserved Domains (5) summary
      smart00545
      Location:15 → 56
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:955 → 1005
      TUDOR; Tudor domain
      cd15576
      Location:717 → 822
      PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
      cd15714
      Location:831 → 940
      ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
      pfam02373
      Location:176 → 292
      JmjC; JmjC domain, hydroxylase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.