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    LOC114760851 bZIP transcription factor 16 [ Prosopis alba ]

    Gene ID: 114760851, updated on 22-May-2024

    Summary

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    Gene symbol
    LOC114760851
    Gene description
    bZIP transcription factor 16
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prosopis alba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Caesalpinioideae; mimosoid clade; Mimoseae; Prosopis
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    Genomic context

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    See LOC114760851 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current ASM479914v1 (GCF_004799145.1) Unplaced Scaffold NW_021635778.1 (36687..42292, complement)

    NW_021635778.1Genomic Context describing neighboring genes Neighboring gene probable mannitol dehydrogenase Neighboring gene probable mannitol dehydrogenase Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 30 Neighboring gene alpha/beta hydrolase domain-containing protein 17B-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021635778 Unplaced Scaffold Reference ASM479914v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bZIP transcription factor 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prosopis alba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM479914v1

    Genomic

    1. NW_021635778.1 Reference ASM479914v1

      Range
      36687..42292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028950145.1 → XP_028805978.1  bZIP transcription factor 16 isoform X1

      Conserved Domains (5) summary
      smart00338
      Location:305 → 369
      BRLZ; basic region leucin zipper
      cd14702
      Location:310 → 360
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam05103
      Location:350 → 404
      DivIVA; DivIVA protein
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:135 → 272
      MFMR_assoc; Disordered region downstream of MFMR

    2. XM_028950144.1 → XP_028805977.1  bZIP transcription factor 16 isoform X1

      Conserved Domains (5) summary
      smart00338
      Location:305 → 369
      BRLZ; basic region leucin zipper
      cd14702
      Location:310 → 360
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam05103
      Location:350 → 404
      DivIVA; DivIVA protein
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:135 → 272
      MFMR_assoc; Disordered region downstream of MFMR

    3. XM_028950146.1 → XP_028805979.1  bZIP transcription factor 16 isoform X2

      Conserved Domains (4) summary
      smart00338
      Location:234 → 298
      BRLZ; basic region leucin zipper
      cd14702
      Location:239 → 289
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam05103
      Location:279 → 333
      DivIVA; DivIVA protein
      pfam16596
      Location:64 → 201
      MFMR_assoc; Disordered region downstream of MFMR
    Nucleotide Protein
    Heading Accession and Version

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