U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    prdm1b PR domain containing 1b, with ZNF domain [ Denticeps clupeoides (denticle herring) ]

    Gene ID: 114770721, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    prdm1b
    Gene description
    PR domain containing 1b, with ZNF domain
    See related
    Ensembl:ENSDCDG00000034673
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Denticeps clupeoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Denticipitoidei; Denticipitidae; Denticeps
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See prdm1b in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current fDenClu1.1 (GCF_900700375.1) 20 NC_041726.1 (5660107..5669795, complement)

    Chromosome 20 - NC_041726.1Genomic Context describing neighboring genes Neighboring gene crystallin beta-gamma domain containing 2 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene prolyl endopeptidase-like Neighboring gene ephrin type-A receptor 7-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_041726.1 Chromosome 20 Reference fDenClu1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone deacetylase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PR domain zinc finger protein 1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Denticeps clupeoides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fDenClu1.1

    Genomic

    1. NC_041726.1 Reference fDenClu1.1

      Range
      5660107..5669795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028964851.1 → XP_028820684.1  PR domain zinc finger protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A8C4CZB8
      Related
      ENSDCDP00000060404.1, ENSDCDT00000072587.1
      Conserved Domains (5) summary
      smart00317
      Location:60 → 165
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:331 → 558
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:463 → 483
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam03154
      Location:190 → 451
      Atrophin-1; Atrophin-1 family
      pfam13465
      Location:503 → 528
      zf-H2C2_2; Zinc-finger double domain

    2. XM_028964852.1 → XP_028820685.1  PR domain zinc finger protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8C4GBF8
      Conserved Domains (6) summary
      smart00317
      Location:11 → 71
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      PHA03247
      Location:93 → 355
      PHA03247; large tegument protein UL36; Provisional
      COG5048
      Location:237 → 464
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:369 → 389
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:367 → 389
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:409 → 434
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases