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    MONBRDRAFT_25238 hypothetical protein [ Monosiga brevicollis MX1 ]

    Gene ID: 5890768, updated on 23-Nov-2023

    Summary

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    Gene symbol
    MONBRDRAFT_25238
    Gene description
    hypothetical protein
    Locus tag
    MONBRDRAFT_25238
    Gene type
    protein coding
    RNA name
    uncharacterized protein
    RefSeq status
    PROVISIONAL
    Organism
    Monosiga brevicollis MX1 (strain: MX1)
    Lineage
    Eukaryota; Choanoflagellida; Craspedida; Salpingoecidae; Monosiga
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    Genomic context

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    See MONBRDRAFT_25238 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    5

    NW_001865046.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001865046.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. King N, et al. Nature, 2008 Feb 14. PMID 18273011, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA ligase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in base-excision repair, DNA ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via alternative nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lagging strand elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA ligase III-XRCC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001865046.1 Reference assembly

      Range
      744825..748782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001745496.1 → XP_001745548.1  uncharacterized protein MONBRDRAFT_25238 [Monosiga brevicollis MX1]

      See identical proteins and their annotated locations for XP_001745548.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A9UYT8
      Conserved Domains (7) summary
      cd07967
      Location:643 → 783
      OBF_DNA_ligase_III; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit
      cd07902
      Location:425 → 637
      Adenylation_DNA_ligase_III; Adenylation domain of DNA Ligase III
      TIGR00574
      Location:281 → 789
      dnl1; DNA ligase I, ATP-dependent (dnl1)
      pfam00645
      Location:84 → 165
      zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
      pfam04675
      Location:225 → 392
      DNA_ligase_A_N; DNA ligase N terminus
      pfam10283
      Location:929 → 949
      zf-CCHH; Zinc-finger (CX5CX6HX5H) motif
      cl00038
      Location:1041 → 1122
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
    Protein Accession Links
    GenPept Link UniProtKB Link
    EDQ89519.1

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