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    wnt1 wingless-type MMTV integration site family, member 1 [ Labrus bergylta (ballan wrasse) ]

    Gene ID: 109984939, updated on 26-Jun-2024

    Summary

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    Gene symbol
    wnt1
    Gene description
    wingless-type MMTV integration site family, member 1
    See related
    Ensembl:ENSLBEG00000012119
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Labrus bergylta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
    Orthologs
    human zebrafish all
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    Genomic context

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    See wnt1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 12 NC_089206.1 (16150795..16156543)
    101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114490.1 (1539366..1543940)

    Chromosome 12 - NC_089206.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 3a Neighboring gene wingless-type MMTV integration site family, member 10b Neighboring gene IKAROS family zinc finger 4 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 22 Neighboring gene limb development membrane protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables frizzled binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Wnt-1
    Names
    Wnt family member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLabBer1.1

    Genomic

    1. NC_089206.1 Reference fLabBer1.1

      Range
      16150795..16156543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029277599.2 → XP_029133432.1  protein Wnt-1

      UniProtKB/TrEMBL
      A0A3Q3F6R3
      Related
      ENSLBEP00000015591.1
      Conserved Domains (1) summary
      smart00097
      Location:59 → 370
      WNT1; found in Wnt-1
    Nucleotide Protein
    Heading Accession and Version

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