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    Nxf1 nuclear RNA export factor 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

    Gene ID: 103737663, updated on 11-Mar-2024

    Summary

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    Gene symbol
    Nxf1
    Gene description
    nuclear RNA export factor 1
    See related
    Ensembl:ENSNGAG00000001539
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nannospalax galili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
    Orthologs
    human mouse all
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    Genomic context

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    See Nxf1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008341874.1 (500699..513295)

    NW_008341874.1Genomic Context describing neighboring genes Neighboring gene testis-expressed protein 54-like Neighboring gene syntaxin 5 Neighboring gene transmembrane protein 223 Neighboring gene transmembrane protein 179B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008341874 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear RNA export factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S.galili_v1.0 Primary Assembly

    Genomic

    1. NW_008341874.1 Reference S.galili_v1.0 Primary Assembly

      Range
      500699..513295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029565591.1 → XP_029421451.1  nuclear RNA export factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C6QFV5
      Conserved Domains (5) summary
      smart00804
      Location:560 → 622
      TAP_C; C-terminal domain of vertebrate Tap protein
      COG4886
      Location:231 → 331
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00780
      Location:386 → 542
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:223 → 265
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:115 → 197
      Tap-RNA_bind; Tap, RNA-binding

    2. XM_008837497.2 → XP_008835719.1  nuclear RNA export factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C6QCS4, A0A8C6QFV5
      Related
      ENSNGAP00000002111.1, ENSNGAT00000002234.1
      Conserved Domains (5) summary
      smart00804
      Location:555 → 617
      TAP_C; C-terminal domain of vertebrate Tap protein
      cd00780
      Location:381 → 537
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:223 → 265
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam13855
      Location:268 → 326
      LRR_8; Leucine rich repeat
      pfam09162
      Location:115 → 197
      Tap-RNA_bind; Tap, RNA-binding
    Nucleotide Protein
    Heading Accession and Version

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