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    TBL1XR1 TBL1X/Y related 1 [ Rhinatrema bivittatum (two-lined caecilian) ]

    Gene ID: 115099276, updated on 17-Mar-2024

    Summary

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    Gene symbol
    TBL1XR1
    Gene description
    TBL1X/Y related 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinatrema bivittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
    Orthologs
    human mouse all
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    Genomic context

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    See TBL1XR1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    100 current aRhiBiv1.1 (GCF_901001135.1) 9 NC_042623.1 (244179790..245034703)

    Chromosome 9 - NC_042623.1Genomic Context describing neighboring genes Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 2 Neighboring gene uncharacterized LOC115099349 Neighboring gene uncharacterized LOC115098513 Neighboring gene N-acetylated alpha-linked acidic dipeptidase like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042623.1 Chromosome 9 Reference aRhiBiv1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box-like/WD repeat-containing protein TBL1XR1
    Names
    TBL1X receptor 1
    transducin beta like 1 X-linked receptor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRhiBiv1.1 Primary Assembly

    Genomic

    1. NC_042623.1 Reference aRhiBiv1.1 Primary Assembly

      Range
      244179790..245034703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029616816.1 → XP_029472676.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    2. XM_029616819.1 → XP_029472679.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    3. XM_029616820.1 → XP_029472680.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    4. XM_029616821.1 → XP_029472681.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    5. XM_029616824.1 → XP_029472684.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    6. XM_029616815.1 → XP_029472675.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

      Conserved Domains (4) summary
      cd00200
      Location:166 → 472
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:230 → 266
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:7 → 31
      LisH
      cl29726
      Location:438 → 512
      TolB; Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport]

    7. XM_029616826.1 → XP_029472686.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    8. XM_029616822.1 → XP_029472682.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    9. XM_029616823.1 → XP_029472683.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    10. XM_029616827.1 → XP_029472687.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    11. XM_029616828.1 → XP_029472688.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    12. XM_029616825.1 → XP_029472685.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    13. XM_029616829.1 → XP_029472689.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X2

    14. XM_029616818.1 → XP_029472678.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    15. XM_029616817.1 → XP_029472677.1  F-box-like/WD repeat-containing protein TBL1XR1 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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