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    lcp2a lymphocyte cytosolic protein 2a [ Salmo trutta (river trout) ]

    Gene ID: 115153940, updated on 11-Apr-2024

    Summary

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    Gene symbol
    lcp2a
    Gene description
    lymphocyte cytosolic protein 2a
    See related
    Ensembl:ENSSTUG00000002942
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Orthologs
    zebrafish all
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    Genomic context

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    See lcp2a in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 19 NC_042975.1 (8552705..8565810)

    Chromosome 19 - NC_042975.1Genomic Context describing neighboring genes Neighboring gene stem-loop binding protein 2 Neighboring gene putative ammonium transporter 1 Neighboring gene zinc finger, matrin-type 2 Neighboring gene forkhead box I3a Neighboring gene NHP2 ribonucleoprotein homolog (yeast)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042975.1 Chromosome 19 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lymphocyte cytosolic protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042975.1 Reference fSalTru1.1 Primary Assembly

      Range
      8552705..8565810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029699645.1 → XP_029555505.1  lymphocyte cytosolic protein 2-like isoform X2

      UniProtKB/TrEMBL
      A0A673W1X5
      Conserved Domains (3) summary
      cd09522
      Location:10 → 78
      SAM_SLP76; SAM domain of SLP76 subfamily
      cd09929
      Location:411 → 531
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
      PHA03307
      Location:105 → 405
      PHA03307; transcriptional regulator ICP4; Provisional

    2. XM_029699644.1 → XP_029555504.1  lymphocyte cytosolic protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A673W1X5, A0A673WB42
      Related
      ENSSTUP00000005952.1, ENSSTUT00000006323.1
      Conserved Domains (3) summary
      cd09522
      Location:10 → 78
      SAM_SLP76; SAM domain of SLP76 subfamily
      cd09929
      Location:413 → 533
      SH2_BLNK_SLP-76; Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)
      PHA03307
      Location:105 → 407
      PHA03307; transcriptional regulator ICP4; Provisional
    Nucleotide Protein
    Heading Accession and Version

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