U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    tmc2a transmembrane channel-like 2a [ Takifugu rubripes (torafugu) ]

    Gene ID: 446002, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    tmc2a
    Gene description
    transmembrane channel-like 2a
    See related
    Ensembl:ENSTRUG00000011665
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Also known as
    tmc2
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See tmc2a in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 6 NC_042290.1 (2508578..2517866, complement)
    101 previous assembly FUGU5 (GCF_000180615.1) 6 NC_018895.1 (1362458..1371896, complement)

    Chromosome 6 - NC_042290.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 5 Neighboring gene annexin A1-like Neighboring gene dynein regulatory complex subunit 7-like Neighboring gene AN1-type zinc finger protein 5-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TMC and EVER genes belong to a larger novel family, the TMC gene family encoding transmembrane proteins. Keresztes G, et al. BMC Genomics, 2003 Jun 17. PMID 12812529, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mechanosensitive monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in detection of mechanical stimulus involved in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vestibular reflex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane channel-like protein 2-A
    Names
    Tmc2-related protein 2
    transmembrane channel like 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042290.1 Reference fTakRub1.2 Primary Assembly

      Range
      2508578..2517866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029838028.1 → XP_029693888.1  transmembrane channel-like protein 2-A

      UniProtKB/TrEMBL
      H2TXS7
      Related
      ENSTRUP00000029485.3, ENSTRUT00000029602.3
      Conserved Domains (1) summary
      pfam07810
      Location:580 → 695
      TMC; TMC domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.