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    dapF diaminopimelate epimerase [ Vibrio crassostreae ]

    Gene ID: 93901519, updated on 14-Oct-2024

    Summary

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    Gene symbol
    dapF
    Gene description
    diaminopimelate epimerase
    Locus tag
    OC193_RS15165
    Gene type
    protein coding
    Organism
    Vibrio crassostreae (strain: LMG 22240, culture-collection: BCCM/LMG:22240, type-material: type strain of Vibrio crassostreae)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
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    Genomic context

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    Location:
    chromosome: 1

    1 - NZ_AP025476.1Genomic Context describing neighboring genes Neighboring gene 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB Neighboring gene tyrosine recombinase XerC Neighboring gene DUF484 family protein Neighboring gene diaminopimelate decarboxylase Neighboring gene lipoprotein Neighboring gene iron donor protein CyaY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_AP025476.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of Mycobacterium tuberculosis diaminopimelic acid epimerase: paired cysteine residues are crucial for racemization. Usha V, et al. FEMS Microbiol Lett, 2008 Mar. PMID 18269631
    2. Dimerization of bacterial diaminopimelate epimerase is essential for catalysis. Hor L, et al. J Biol Chem, 2013 Mar 29. PMID 23426375, Free PMC Article
    3. Chemical mechanism of Haemophilus influenzae diaminopimelate epimerase. Koo CW, et al. Biochemistry, 1999 Apr 6. PMID 10194362
    4. Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach. Jiang C, et al. Curr Microbiol, 2021 Dec 14. PMID 34905112

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    diaminopimelate epimerase
    WP_048662862.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_AP025476.1 Reference assembly

      Range
      3358294..3359124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_048662862.1 MULTISPECIES: diaminopimelate epimerase [Vibrio]

      See identical proteins and their annotated locations for WP_048662862.1

      UniProtKB/TrEMBL
      A0A4R2F748
    Nucleotide Protein
    Heading Accession and Version