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    CASC3 CASC3 exon junction complex subunit [ Suricata suricatta (meerkat) ]

    Gene ID: 115282049, updated on 17-Mar-2024

    Summary

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    Gene symbol
    CASC3
    Gene description
    CASC3 exon junction complex subunit
    See related
    Ensembl:ENSSSUG00005016920
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Suricata suricatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Herpestidae; Suricata
    Orthologs
    human mouse all
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    Genomic context

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    See CASC3 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current meerkat_22Aug2017_6uvM2_HiC (GCF_006229205.1) 17 NC_043716.1 (37203963..37223867)

    Chromosome 17 - NC_043716.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115282707 Neighboring gene MSL complex subunit 1 Neighboring gene U6 spliceosomal RNA Neighboring gene Rap guanine nucleotide exchange factor like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043716.1 Chromosome 17 Reference meerkat_22Aug2017_6uvM2_HiC

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CASC3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Suricata suricatta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference meerkat_22Aug2017_6uvM2_HiC

    Genomic

    1. NC_043716.1 Reference meerkat_22Aug2017_6uvM2_HiC

      Range
      37203963..37223867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029927852.1 → XP_029783712.1  protein CASC3 isoform X1

      Conserved Domains (1) summary
      smart01044
      Location:146 → 248
      Btz; CASC3/Barentsz eIF4AIII binding

    2. XM_029927853.1 → XP_029783713.1  protein CASC3 isoform X2

      UniProtKB/TrEMBL
      A0A673UKG9
      Related
      ENSSSUP00005026038.1, ENSSSUT00005029767.1
      Conserved Domains (2) summary
      smart01044
      Location:146 → 248
      Btz; CASC3/Barentsz eIF4AIII binding
      pfam09770
      Location:526 → 688
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein
    Heading Accession and Version

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