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    LOC113407231 cystathionine gamma-lyase-like [ Terrapene triunguis (Three-toed box turtle) ]

    Gene ID: 113407231, updated on 28-Nov-2024

    Summary

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    Gene symbol
    LOC113407231
    Gene description
    cystathionine gamma-lyase-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Terrapene triunguis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
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    Genomic context

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    See LOC113407231 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664561.1 (48275349..48347865, complement)

    NW_020664561.1Genomic Context describing neighboring genes Neighboring gene zinc finger Ran-binding domain-containing protein 2 Neighboring gene prostaglandin E2 receptor EP3 subtype-like Neighboring gene ankyrin repeat domain-containing protein 13C-A Neighboring gene serine/arginine-rich splicing factor 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020664561 Unplaced Scaffold Reference T_m_triunguis-2.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cystathionine gamma-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cysteine biosynthetic process via cystathionine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transsulfuration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cystathionine gamma-lyase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T_m_triunguis-2.0

    Genomic

    1. NW_020664561.1 Reference T_m_triunguis-2.0

      Range
      48275349..48347865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026655468.2 → XP_026511253.2  cystathionine gamma-lyase-like

      Conserved Domains (2) summary
      PHA03307
      Location:109 → 250
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam01053
      Location:330 → 706
      Cys_Met_Meta_PP; Cys/Met metabolism PLP-dependent enzyme
    Nucleotide Protein
    Heading Accession and Version

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