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    LOC115409845 uncharacterized LOC115409845 [ Salarias fasciatus (jewelled blenny) ]

    Gene ID: 115409845, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115409845
    Gene description
    uncharacterized LOC115409845
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salarias fasciatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes; Blennioidei; Blenniidae; Salariinae; Salarias
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    Genomic context

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    See LOC115409845 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current fSalaFa1.1 (GCF_902148845.1) 22 NC_043765.1 (23825252..23838967, complement)

    Chromosome 22 - NC_043765.1Genomic Context describing neighboring genes Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2-like Neighboring gene transfer RNA glutamine (anticodon CUG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043765.1 Chromosome 22 Reference fSalaFa1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC115409845

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salarias fasciatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalaFa1.1 Primary Assembly

    Genomic

    1. NC_043765.1 Reference fSalaFa1.1 Primary Assembly

      Range
      23825252..23838967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030121121.1 → XP_029976981.1  uncharacterized protein LOC115409845 isoform X1

      Conserved Domains (7) summary
      COG0507
      Location:2413 → 2853
      RecD; ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I [Replication, recombination and repair]
      cd00229
      Location:72 → 234
      SGNH_hydrolase; or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical ...
      pfam04843
      Location:702 → 877
      Herpes_teg_N; Herpesvirus tegument protein, N-terminal conserved region
      pfam14214
      Location:1706 → 1900
      Helitron_like_N; Helitron helicase-like domain at N-terminus
      pfam03372
      Location:2903 → 3107
      Exo_endo_phos; Endonuclease/Exonuclease/phosphatase family
      cl19932
      Location:1022 → 1161
      OTU; OTU-like cysteine protease
      cl28899
      Location:2434 → 2619
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    2. XM_030121124.1 → XP_029976984.1  uncharacterized protein LOC115409845 isoform X4

      UniProtKB/TrEMBL
      A0A672FV33

    3. XM_030121123.1 → XP_029976983.1  uncharacterized protein LOC115409845 isoform X3

      UniProtKB/TrEMBL
      A0A672FV33

    4. XM_030121122.1 → XP_029976982.1  uncharacterized protein LOC115409845 isoform X2

      UniProtKB/TrEMBL
      A0A672FV33
      Conserved Domains (7) summary
      COG0507
      Location:2343 → 2783
      RecD; ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I [Replication, recombination and repair]
      cd00229
      Location:72 → 234
      SGNH_hydrolase; or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical ...
      pfam04843
      Location:632 → 807
      Herpes_teg_N; Herpesvirus tegument protein, N-terminal conserved region
      pfam14214
      Location:1634 → 1830
      Helitron_like_N; Helitron helicase-like domain at N-terminus
      pfam03372
      Location:2833 → 3037
      Exo_endo_phos; Endonuclease/Exonuclease/phosphatase family
      cl19932
      Location:952 → 1091
      OTU; OTU-like cysteine protease
      cl28899
      Location:2364 → 2549
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    5. XM_030121125.1 → XP_029976985.1  uncharacterized protein LOC115409845 isoform X5

      UniProtKB/TrEMBL
      A0A672FV33

    6. XM_030121127.1 → XP_029976987.1  uncharacterized protein LOC115409845 isoform X7

      UniProtKB/TrEMBL
      A0A672FV33

    7. XM_030121126.1 → XP_029976986.1  uncharacterized protein LOC115409845 isoform X6

      UniProtKB/TrEMBL
      A0A672FV33
      Conserved Domains (7) summary
      COG0507
      Location:2136 → 2576
      RecD; ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I [Replication, recombination and repair]
      cd00229
      Location:72 → 234
      SGNH_hydrolase; or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical ...
      pfam04843
      Location:425 → 600
      Herpes_teg_N; Herpesvirus tegument protein, N-terminal conserved region
      pfam14214
      Location:1427 → 1623
      Helitron_like_N; Helitron helicase-like domain at N-terminus
      pfam03372
      Location:2626 → 2830
      Exo_endo_phos; Endonuclease/Exonuclease/phosphatase family
      cl19932
      Location:745 → 884
      OTU; OTU-like cysteine protease
      cl28899
      Location:2157 → 2342
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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