U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    Hmt-1 ABC transporter ATP-binding protein/permease Hmt-1 [ Manduca sexta (tobacco hornworm) ]

    Gene ID: 115447634, updated on 15-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Hmt-1
    Gene description
    ABC transporter ATP-binding protein/permease Hmt-1
    Locus tag
    O3G_MSEX009829
    See related
    EnsemblRapid:ENSMSXG00000013247
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manduca sexta
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
    Orthologs
    fruit fly all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Hmt-1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current JHU_Msex_v1.0 (GCF_014839805.1) 14 NC_051128.1 (8356591..8380218)
    100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021942216.1 (284137..306805, complement)

    Chromosome 14 - NC_051128.1Genomic Context describing neighboring genes Neighboring gene lysophospholipid acyltransferase 7 Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene uncharacterized LOC115447633 Neighboring gene HEAT repeat-containing protein 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type heme transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heme transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATP-binding cassette sub-family B member 6, mitochondrial

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference JHU_Msex_v1.0 Primary Assembly

    Genomic

    1. NC_051128.1 Reference JHU_Msex_v1.0 Primary Assembly

      Range
      8356591..8380218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030174798.2 → XP_030030658.1  ATP-binding cassette sub-family B member 6, mitochondrial

      UniProtKB/TrEMBL
      A0A921ZGX9, A0A922CSM5
      Related
      ENSMSXP00000018919.1, ENSMSXT00000021834.1
      Conserved Domains (2) summary
      COG5265
      Location:311 → 807
      ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
      pfam16185
      Location:3 → 238
      MTABC_N; Mitochondrial ABC-transporter N-terminal five TM region

    2. XM_030174799.2 → XP_030030659.1  ATP-binding cassette sub-family B member 6, mitochondrial

      UniProtKB/TrEMBL
      A0A921ZGX9, A0A922CSM5
      Conserved Domains (2) summary
      COG5265
      Location:311 → 807
      ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
      pfam16185
      Location:3 → 238
      MTABC_N; Mitochondrial ABC-transporter N-terminal five TM region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases