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    TSEN34 tRNA splicing endonuclease subunit 34 [ Microcaecilia unicolor ]

    Gene ID: 115466516, updated on 17-Mar-2024

    Summary

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    Gene symbol
    TSEN34
    Gene description
    tRNA splicing endonuclease subunit 34
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcaecilia unicolor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
    Orthologs
    human mouse all
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    Genomic context

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    See TSEN34 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current aMicUni1.1 (GCF_901765095.1) 3 NC_044033.1 (252473995..252479643, complement)

    Chromosome 3 - NC_044033.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase family cytosolic 2B member 1-like Neighboring gene glutamate ionotropic receptor NMDA type subunit 2D Neighboring gene brain-specific angiogenesis inhibitor 1-associated protein 2-like Neighboring gene glutamate rich WD repeat containing 1 Neighboring gene lemur tyrosine kinase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044033.1 Chromosome 3 Reference aMicUni1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA-intron endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA-type intron splice site recognition and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of tRNA-intron endonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA-splicing endonuclease subunit Sen34

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aMicUni1.1 Primary Assembly

    Genomic

    1. NC_044033.1 Reference aMicUni1.1 Primary Assembly

      Range
      252473995..252479643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030197801.1 → XP_030053661.1  tRNA-splicing endonuclease subunit Sen34

      UniProtKB/TrEMBL
      A0A6P7XKB1
      Conserved Domains (1) summary
      pfam01974
      Location:212 → 296
      tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain

    2. XM_030197800.1 → XP_030053660.1  tRNA-splicing endonuclease subunit Sen34

      UniProtKB/TrEMBL
      A0A6P7XKB1
      Conserved Domains (1) summary
      pfam01974
      Location:212 → 296
      tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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