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    PLS3 plastin 3 [ Microcaecilia unicolor ]

    Gene ID: 115473780, updated on 17-Mar-2024

    Summary

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    Gene symbol
    PLS3
    Gene description
    plastin 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcaecilia unicolor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
    Orthologs
    human mouse all
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    Genomic context

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    See PLS3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current aMicUni1.1 (GCF_901765095.1) 7 NC_044037.1 (49822088..50085237, complement)

    Chromosome 7 - NC_044037.1Genomic Context describing neighboring genes Neighboring gene sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)-like Neighboring gene angiotensin II receptor type 2 Neighboring gene UAP56-interacting factor-like Neighboring gene leucine rich repeats and calponin homology domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044037.1 Chromosome 7 Reference aMicUni1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament network formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aMicUni1.1 Primary Assembly

    Genomic

    1. NC_044037.1 Reference aMicUni1.1 Primary Assembly

      Range
      49822088..50085237 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030208871.1 → XP_030064731.1  plastin-3 isoform X1

      UniProtKB/TrEMBL
      A0A6P7YIK4
      Conserved Domains (1) summary
      COG5069
      Location:53 → 691
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    2. XM_030208872.1 → XP_030064732.1  plastin-3 isoform X2

      UniProtKB/TrEMBL
      A0A6P7YB64
      Conserved Domains (1) summary
      COG5069
      Location:17 → 621
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    3. XM_030208873.1 → XP_030064733.1  plastin-3 isoform X2

      UniProtKB/TrEMBL
      A0A6P7YB64
      Conserved Domains (1) summary
      COG5069
      Location:17 → 621
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    Nucleotide Protein
    Heading Accession and Version

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