Cpeb1 cytoplasmic polyadenylation element binding protein 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Cpeb1provided by MGI
Official Full Name: cytoplasmic polyadenylation element binding protein 1provided by MGI
Primary source: MGI:MGI:108442
See related: Ensembl:ENSMUSG00000025586 AllianceGenome:MGI:108442
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Cpeb; mCPEB; Cpe-bp1; mCpeb-1
Summary: Enables mRNA 3'-UTR AU-rich region binding activity and mRNA regulatory element binding translation repressor activity. Involved in cellular response to amino acid stimulus; cellular response to hypoxia; and regulation of translation. Acts upstream of or within regulation of neuronal synaptic plasticity; regulation of translation; and synaptonemal complex assembly. Located in several cellular components, including cytoplasm; meiotic spindle; and nucleus. Is active in glutamatergic synapse. Is expressed in central nervous system; early embryo; reproductive system; and sensory organ. Orthologous to human CPEB1 (cytoplasmic polyadenylation element binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Broad expression in cortex adult (RPKM 9.8), frontal lobe adult (RPKM 9.6) and 15 other tissues See more
Orthologs: human all
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Genomic context

Location:: 7 D3; 7 45.71 cM

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	7	NC_000073.7 (80996774..81105207, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	7	NC_000073.6 (81347026..81458001, complement)

Chromosome 7 - NC_000073.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Multiple intersecting pathways are involved in CPEB1 phosphorylation and regulation of translation during mouse oocyte meiosis.
Title: Multiple intersecting pathways are involved in CPEB1 phosphorylation and regulation of translation during mouse oocyte meiosis.
PATL2 regulates mRNA homeostasis in oocytes by interacting with EIF4E and CPEB1.
Title: PATL2 regulates mRNA homeostasis in oocytes by interacting with EIF4E and CPEB1.
CPEB1 regulates the inflammatory immune response, phagocytosis, and alternative polyadenylation in microglia.
Title: CPEB1 regulates the inflammatory immune response, phagocytosis, and alternative polyadenylation in microglia.
MicroRNA-455-5p/CPEB1 pathway mediates Abeta-related learning and memory deficits in a mouse model of Alzheimer's disease.
Title: MicroRNA-455-5p/CPEB1 pathway mediates Aβ-related learning and memory deficits in a mouse model of Alzheimer's disease.
Obesity-Induced miR-455 Upregulation Promotes Adaptive Pancreatic beta-Cell Proliferation Through the CPEB1/CDKN1B Pathway.
Title: Obesity-Induced miR-455 Upregulation Promotes Adaptive Pancreatic β-Cell Proliferation Through the CPEB1/CDKN1B Pathway.
Noncanonical cytoplasmic poly(A) polymerases regulate RNA levels, alternative RNA processing, and synaptic plasticity but not hippocampal-dependent behaviours.
Title: Noncanonical cytoplasmic poly(A) polymerases regulate RNA levels, alternative RNA processing, and synaptic plasticity but not hippocampal-dependent behaviours.
AUF1, an mRNA decay factor, has a discordant role in Cpeb1 expression.
Title: AUF1, an mRNA decay factor, has a discordant role in Cpeb1 expression.
Effects of CPEB1 in the anterior cingulate cortex on visceral pain in mice.
Title: Effects of CPEB1 in the anterior cingulate cortex on visceral pain in mice.
Using the 3'-UTRs of mouse Cpeb1, Btg4 and Cnot6l mRNAs, we deciphered the combinatorial code that controls developmental stage-specific translation during meiotic maturation
Title: A combinatorial code for mRNA 3'-UTR-mediated translational control in the mouse oocyte.
CPEB1 level was increased in the basolateral amygdala (BLA) of model mice injected with Complete Freund's Adjuvant. CPEB1 knockdown in the BLA can relieve anxiety-like behaviors but not pain-like behaviors by heightening inhibitory transmission and restoring the excitatory/inhibitory balance in model mice.
Title: Anxiolytic effect of CPEB1 knockdown on the amygdala of a mouse model of inflammatory pain.

Submit: New GeneRIF Correction See all GeneRIFs (30)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)
Targeted (2) 1 citation

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Cpeb1 (e-PCR), detects polymorphism
- UniSTS:498263

Cpeb1 (e-PCR), detects polymorphism
- UniSTS:479083

AU024112 (e-PCR)
- UniSTS:179601

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables RNA binding	IDA Inferred from Direct Assay more info	PubMed
enables mRNA 3'-UTR AU-rich region binding	IDA Inferred from Direct Assay more info	PubMed
enables mRNA 3'-UTR binding	IBA Inferred from Biological aspect of Ancestor more info
enables mRNA 3'-UTR binding	ISO Inferred from Sequence Orthology more info
enables mRNA binding	IDA Inferred from Direct Assay more info	PubMed
enables mRNA regulatory element binding translation repressor activity	IBA Inferred from Biological aspect of Ancestor more info
enables mRNA regulatory element binding translation repressor activity	IDA Inferred from Direct Assay more info	PubMed
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables ribosome binding	IBA Inferred from Biological aspect of Ancestor more info
enables translation factor activity, RNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in cellular response to amino acid stimulus	IDA Inferred from Direct Assay more info	PubMed
involved_in cellular response to hypoxia	IDA Inferred from Direct Assay more info	PubMed
involved_in cellular response to hypoxia	ISO Inferred from Sequence Orthology more info
involved_in cellular response to insulin stimulus	ISO Inferred from Sequence Orthology more info
involved_in cellular response to insulin stimulus	ISS Inferred from Sequence or Structural Similarity more info
involved_in mRNA processing	IEA Inferred from Electronic Annotation more info
involved_in mRNA transport	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of cell population proliferation	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of cytoplasmic translation	IBA Inferred from Biological aspect of Ancestor more info
involved_in negative regulation of cytoplasmic translation	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of cytoplasmic translation	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of translation	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of cell migration	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of neuron projection development	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of translation	ISO Inferred from Sequence Orthology more info
involved_in regulation of mRNA 3'-end processing	ISO Inferred from Sequence Orthology more info
involved_in regulation of mRNA 3'-end processing	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of neuronal synaptic plasticity	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of translation	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of translation at synapse, modulating synaptic transmission	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of translation at synapse, modulating synaptic transmission	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within synaptonemal complex assembly	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in P-body	IEA Inferred from Electronic Annotation more info
located_in centrosome	ISO Inferred from Sequence Orthology more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in cytosol	ISO Inferred from Sequence Orthology more info
is_active_in glutamatergic synapse	IDA Inferred from Direct Assay more info	PubMed
is_active_in glutamatergic synapse	IMP Inferred from Mutant Phenotype more info	PubMed
is_active_in glutamatergic synapse	ISO Inferred from Sequence Orthology more info
located_in growth cone	ISO Inferred from Sequence Orthology more info
located_in meiotic spindle	IDA Inferred from Direct Assay more info	PubMed
located_in membrane	IDA Inferred from Direct Assay more info	PubMed
is_active_in neuron projection	IBA Inferred from Biological aspect of Ancestor more info
located_in neuronal cell body	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in perinuclear region of cytoplasm	ISO Inferred from Sequence Orthology more info
is_active_in postsynapse	ISO Inferred from Sequence Orthology more info
located_in postsynaptic density	IEA Inferred from Electronic Annotation more info
is_active_in postsynaptic density	ISO Inferred from Sequence Orthology more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
is_active_in synapse	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: cytoplasmic polyadenylation element-binding protein 1

Names: CPE-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001252525.1 → NP_001239454.1 cytoplasmic polyadenylation element-binding protein 1 isoform 1

See identical proteins and their annotated locations for NP_001239454.1

Status: VALIDATED

Description

Transcript Variant: This variant (1) encodes isoform 1.

Source sequence(s)

AK077799, BC125476, BY720025, CO803180

Consensus CDS

CCDS57557.1

UniProtKB/TrEMBL

F6X7Z3, Q059Z2

Related

ENSMUSP00000137079.2, ENSMUST00000178892.3

Conserved Domains (4) summary

cd12723
Location:309 → 416

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:427 → 512

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:504 → 559

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:1 → 307

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
NM_001252526.1 → NP_001239455.1 cytoplasmic polyadenylation element-binding protein 1 isoform 3

Status: VALIDATED

Description

Transcript Variant: This variant (3) uses a different splice in the coding region, compared to variant 1. The resulting protein (isoform 3) is shorter when it is compared to isoform 1.

Source sequence(s)

AK077799, BC125476, BC144948, BY720025, CO803180

UniProtKB/TrEMBL

F6X7Z3

Related

ENSMUSP00000120139.2, ENSMUST00000130310.8

Conserved Domains (4) summary

cd12723
Location:308 → 410

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:421 → 506

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:498 → 553

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:1 → 306

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
NM_001357107.1 → NP_001344036.1 cytoplasmic polyadenylation element-binding protein 1 isoform 4

Status: VALIDATED

Description

Transcript Variant: This variant (4) represents use of an alternate promoter and therefore differs in the 5' UTR and 5' coding region, compared to variant 1. These differences cause translation initiation at a downstream start codon and result in an isoform (4) with a shorter N-terminus, compared to isoform 1. Variants 4 and 12-16 all encode the same isoform (4).

Source sequence(s)

AC162897, CO803180

UniProtKB/TrEMBL

F6X7Z3

Conserved Domains (4) summary

pfam16366
Location:423 → 478

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:1 → 231

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

cd12723
Location:233 → 335

RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:346 → 429

RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
NM_001412273.1 → NP_001399202.1 cytoplasmic polyadenylation element-binding protein 1 isoform 5

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412274.1 → NP_001399203.1 cytoplasmic polyadenylation element-binding protein 1 isoform 6

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412275.1 → NP_001399204.1 cytoplasmic polyadenylation element-binding protein 1 isoform 7

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412276.1 → NP_001399205.1 cytoplasmic polyadenylation element-binding protein 1 isoform 8

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412277.1 → NP_001399206.1 cytoplasmic polyadenylation element-binding protein 1 isoform 9

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412278.1 → NP_001399207.1 cytoplasmic polyadenylation element-binding protein 1 isoform 9

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412279.1 → NP_001399208.1 cytoplasmic polyadenylation element-binding protein 1 isoform 9

Status: VALIDATED

Source sequence(s)

AC162897
NM_001412280.1 → NP_001399209.1 cytoplasmic polyadenylation element-binding protein 1 isoform 4

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412281.1 → NP_001399210.1 cytoplasmic polyadenylation element-binding protein 1 isoform 4

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412282.1 → NP_001399211.1 cytoplasmic polyadenylation element-binding protein 1 isoform 4

Status: VALIDATED

Source sequence(s)

AC162897
NM_001412283.1 → NP_001399212.1 cytoplasmic polyadenylation element-binding protein 1 isoform 4

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412284.1 → NP_001399213.1 cytoplasmic polyadenylation element-binding protein 1 isoform 4

Status: VALIDATED

Source sequence(s)

AC162897
NM_001412285.1 → NP_001399214.1 cytoplasmic polyadenylation element-binding protein 1 isoform 10

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412286.1 → NP_001399215.1 cytoplasmic polyadenylation element-binding protein 1 isoform 10

Status: VALIDATED

Source sequence(s)

AC162897, AC167120, AC169082
NM_001412287.1 → NP_001399216.1 cytoplasmic polyadenylation element-binding protein 1 isoform 10

Status: VALIDATED

Source sequence(s)

AC162897
NM_007755.5 → NP_031781.1 cytoplasmic polyadenylation element-binding protein 1 isoform 2

See identical proteins and their annotated locations for NP_031781.1

Status: VALIDATED

Description

Transcript Variant: This variant (2) uses a different splice in the coding region, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1.

Source sequence(s)

AK077799, BC144948, BY720025, CO803180, Y08260

Consensus CDS

CCDS40007.1

UniProtKB/Swiss-Prot

P70166, Q8C5P9

UniProtKB/TrEMBL

F6X7Z3

Related

ENSMUSP00000095936.4, ENSMUST00000098331.10

Conserved Domains (4) summary

cd12723
Location:308 → 415

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:426 → 511

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:503 → 558

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:1 → 306

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000073.7 Reference GRCm39 C57BL/6J

Range

80996774..81105207 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_030242061.2 → XP_030097921.1 cytoplasmic polyadenylation element-binding protein 1 isoform X7

UniProtKB/TrEMBL

F6X7Z3

Conserved Domains (4) summary

cd12723
Location:309 → 399

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:410 → 495

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:487 → 513

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:1 → 307

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
XM_011250788.4 → XP_011249090.1 cytoplasmic polyadenylation element-binding protein 1 isoform X5

UniProtKB/TrEMBL

F6X7Z3

Conserved Domains (4) summary

cd12723
Location:347 → 437

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:448 → 533

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:525 → 580

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:48 → 345

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
XM_036152627.1 → XP_036008520.1 cytoplasmic polyadenylation element-binding protein 1 isoform X6

UniProtKB/TrEMBL

F6X7Z3

Conserved Domains (4) summary

pfam16366
Location:524 → 579

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:44 → 344

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

cd12723
Location:346 → 436

RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:447 → 530

RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
XM_011250785.4 → XP_011249087.1 cytoplasmic polyadenylation element-binding protein 1 isoform X2

UniProtKB/TrEMBL

F6X7Z3

Conserved Domains (4) summary

cd12723
Location:346 → 453

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:464 → 549

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:541 → 596

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:48 → 344

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
XM_011250784.4 → XP_011249086.1 cytoplasmic polyadenylation element-binding protein 1 isoform X1

UniProtKB/TrEMBL

F6X7Z3

Conserved Domains (4) summary

cd12723
Location:347 → 454

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:465 → 550

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:542 → 597

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:48 → 345

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
XM_011250790.4 → XP_011249092.1 cytoplasmic polyadenylation element-binding protein 1 isoform X8

See identical proteins and their annotated locations for XP_011249092.1

UniProtKB/TrEMBL

F6X7Z3

Conserved Domains (4) summary

cd12723
Location:233 → 340

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:351 → 436

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:428 → 483

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:1 → 231

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
XM_011250792.3 → XP_011249094.1 cytoplasmic polyadenylation element-binding protein 1 isoform X10

Conserved Domains (4) summary

cd12723
Location:179 → 286

RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

cd12725
Location:297 → 382

RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

pfam16366
Location:374 → 429

CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

pfam16368
Location:1 → 177

CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus