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    dhx9 DEAH (Asp-Glu-Ala-His) box helicase 9 [ Chanos chanos (milkfish) ]

    Gene ID: 115811929, updated on 17-Mar-2024

    Summary

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    Gene symbol
    dhx9
    Gene description
    DEAH (Asp-Glu-Ala-His) box helicase 9
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chanos chanos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gonorynchiformes; Chanidae; Chanos
    Orthologs
    human zebrafish all
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    Genomic context

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    See dhx9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    100 current fChaCha1.1 (GCF_902362185.1) 5 NC_044499.1 (6713401..6725458)

    Chromosome 5 - NC_044499.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 45 Neighboring gene RAS protein activator like 2 Neighboring gene SHC binding and spindle associated 1 like Neighboring gene laminin, gamma 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044499.1 Chromosome 5 Reference fChaCha1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables 3'-5' DNA/RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase A
    Names
    DExH-box helicase 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chanos chanos Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fChaCha1.1 Primary Assembly

    Genomic

    1. NC_044499.1 Reference fChaCha1.1 Primary Assembly

      Range
      6713401..6725458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030774350.1 → XP_030630210.1  ATP-dependent RNA helicase A

      UniProtKB/TrEMBL
      A0A6J2VBJ9
      Conserved Domains (4) summary
      COG1643
      Location:383 → 1058
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd17972
      Location:337 → 570
      DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
      cd19854
      Location:3 → 71
      DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
      cd19855
      Location:185 → 259
      DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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